Projects per year
Organisation profile
Introduction / mission
Constructing computational models to improve the knowledge of diseases, biomedical processes and structures
Highlighted phrase
Describing, understanding and ultimately controlling life's processes
Organisational profile
The research group Computational Biology develops computational models that help to obtain qualitative and quantitative knowledge of diseases, biomedical processes and structures. The computational models are developed based on a thorough understanding of molecular modeling methods, data analysis techniques, machine learning, systems biology, and parameter estimation techniques. Next to data obtained through collaborations and partnerships with other university groups, companies and hospitals, within the Synthetic Biology arena data is also achieved by own experiments. Topics of research are, amongst others, biomembranes, protein interactions, complex biochemical networks, and diseases like metabolic syndrome, diabetes mellitus and cancer. The group also puts efforts in enhancing the shift from ‘describing’ life’s processes to ‘understanding’ them and ‘capturing’ them in validated predictive models, and even ‘managing’ or ‘controlling’ them in real life. Research themes of the group are Molecular Simulations, Systems Biology and Metabolic Disease, Systems Biology for Oncology, Synthetic Biology, Data Science and Bioinformatics.
Fingerprint
Collaborations and top research areas from the last five years
Profiles
-
Liza Abdul Rahman
- Biomedical Engineering, Computational Biology - Doctoral Candidate
- Biomedical Engineering, Systems Biology and Metabolic Disease - Doctoral Candidate
Person: Prom. : doctoral candidate (PhD)
-
Mart Bartelds, MSc
- Biomedical Engineering, Computational Biology - University Researcher
Person: OWP : University Teacher / Researcher
-
Bas Bögels
- Biomedical Engineering, Computational Biology - Doctoral Candidate
- Biomedical Engineering, Chemical Biology - Doctoral Candidate
- Biomedical Engineering, Synthetic Biology - Doctoral Candidate
Person: Prom. : doctoral candidate (PhD)
Projects
- 1 Active
-
NWO/Complexity/MATRyOSka
van Riel, N. A. W., O'Donovan, S., Arts, I. C. W. & Afman, L.
1/10/17 → 31/12/22
Project: Research direct
Research output
-
Aging and Allostasis: Using Bayesian Network Analytics to Explore and Evaluate Allostatic Markers in the Context of Aging
Kallen, V., Tahir, M., Bedard, A., Bongers, B., van Riel, N. & van Meeteren, N., 21 Jan 2021, In: Diagnostics. 11, 2, 18 p., 157.Research output: Contribution to journal › Article › Academic › peer-review
Open Access -
Altered bile acid kinetics contribute to postprandial hypoglycaemia after Roux-en-Y gastric bypass surgery
van den Broek, M., de Heide, L. J. M., Sips, F. L. P., Koehorst, M., van Zutphen, T., Emous, M., van Faassen, M., Groen, A. K., van Riel, N. A. W., de Boer, J. F., van Beek, A. P. & Kuipers, F., Mar 2021, In: International Journal of Obesity. 45, 3, p. 619-630 12 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access3 Citations (Scopus) -
Assembly of dynamic supramolecular polymers on a DNA origami platform
Schill, J., Rosier, B., Gumí Audenis, B., Magdalena Estirado, E., de Greef, T. & Brunsveld, L., 29 Mar 2021, In: Angewandte Chemie - International Edition. 60, 14, p. 7612-7616 5 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access
Prizes
-
AMC Principal Investigator
van Riel, Natal A.W. (Recipient), 1 May 2016
Prize: Other › Career, activity or publication related prizes (lifetime, best paper, poster etc.) › Scientific
-
Best poster award
Rozendaal, Y. (Recipient), 28 Oct 2016
Prize: Other › Career, activity or publication related prizes (lifetime, best paper, poster etc.) › Scientific
-
COST Action BM1402: Development of a European network for preclinical testing of interventions in mouse models of age and age-related diseases (MouseAGE)
van Riel, Natal A.W. (Recipient), 1 Dec 2014
Prize: Other › Discipline related › Scientific
Activities
-
Personalized modelling of bile acid metabolism: predicting metabolic effects of bariatric surgery
Natal van Riel (Speaker)
6 Jul 2018Activity: Talk or presentation types › Invited talk › Scientific
-
A physiology based glucose-insulin-GLP-1 model: explaining changes observed after Roux-en-Y gastric bypass
L.C.P. Thijssen (Speaker) & Natal van Riel (Member)
15 May 2018Activity: Talk or presentation types › Contributed talk › Scientific
-
4th Dutch Bioinformatics & Systems Biology Conference
Natal van Riel (Organiser)
15 May 2018 → 16 May 2018Activity: Participating in or organising an event types › Conference › Scientific
Press/Media
-
Machine learning helps in predicting when immunotherapy will be effective
Peter A.J. Hilbers & Federica Eduati
30/06/21
2 items of Media coverage
Press/Media: Expert Comment
-
-
Eindhoven University of Technology: Multimillion ERC Grants Bring DNA Computing and Longer-Lasting Donor Organs Closer
10/12/20
1 item of Media coverage
Press/Media: Expert Comment
Research areas
-
Bioinformatics
Rina van Dijck-Postma (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager) & Amy Broeders (Content manager)
Impact: Research Topic/Theme (at group level)
-
Brain Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
-
Cardiovascular Image Analysis
Josien P.W. Pluim (Content manager), Sylvia van Beek-Verschure (Content manager), Lieke van Gorp (Content manager), Amy Broeders (Content manager) & Erica Jansen (Content manager)
Impact: Research Topic/Theme (at group level)
Student theses
-
A computational biology framework: a data analysis tool to support biomedical engineers in their research
Author: Beishuizen, T., 29 Nov 2018Supervisor: Bosnacki, D. (Supervisor 1), Cheplygina, V. (Supervisor 2), Hilbers, P. (Supervisor 2), Fletcher, G. (Supervisor 2) & Vanschoren, J. (Supervisor 2)
Student thesis: Master
-
A physiology based glucose-insulin-GLP-1 model: explaining changes observed after Roux-en-Y gastric bypass
Author: Thijssen, L., 30 Aug 2018Supervisor: Sips, F. (Supervisor 1), Yildirim, V. (Supervisor 2), van Riel, N. (Supervisor 2) & Hilbers, P. (Supervisor 2)
Student thesis: Master
-
Automatic myocardial scar segmentation and quantification in LGE CMR images
Author: Borleh, A., 27 Aug 2020Supervisor: Pluim, J. P. (Supervisor 1), Breeuwer, M. (Supervisor 2) & Hilbers, P. A. (Supervisor 2)
Student thesis: Master